Overview & Legal Framework

GST is a destination-based, multi-stage tax. Every state and Union Territory is treated as a separate jurisdiction under the CGST Act, 2017. A business operating in more than one state must obtain a separate GSTIN for each state — there is no single "national GSTIN" that covers all states.

📖 Governing Law: Section 25 of the CGST Act, 2017 — "Procedure for Registration". Sub-section (1) requires registration in every state where the person is liable to be registered. Sub-sections (4) and (5) create the concept of "distinct persons" for establishments in different states. Read with Rules 8–26 of CGST Rules, 2017.
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One GSTIN per State Sec 25(1)

Every person who is liable to be registered under GST shall apply for registration in every State or Union Territory in which he is so liable. A single PAN entity operating in 10 states must obtain 10 separate GSTINs — one for each state/UT.

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Distinct Persons Sec 25(4)/(5)

Where a person has obtained or is required to obtain more than one registration — whether in one state (multiple registrations) or in multiple states — each such registration is treated as a distinct person for GST purposes. All inter-unit transactions are taxable supplies.

No Threshold for Inter-State Supply Sec 24(i)

Any person making inter-state taxable supply must register under GST — regardless of aggregate turnover. Even a business with turnover of ₹1 lakh making inter-state supply is required to register. This is a mandatory registration trigger with no threshold exception.

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IGST on Inter-Unit Transfers Sec 7(1)(c) r/w Sch I

Stock transfers, services, and common cost recoveries between establishments of the same entity registered in different states (distinct persons) are treated as taxable supplies under Schedule I, Para 2. IGST is charged on such transactions — even if made without consideration.

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ITC Available on Cross-State Transactions

Because inter-unit transactions are taxable, ITC is also available on IGST charged between distinct persons. This preserves the credit chain and avoids cascading. The receiving unit claims ITC; the supplying unit reports output tax liability in its GSTR-1 and GSTR-3B.

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Place of Supply Rules Determine IGST vs CGST/SGST

The IGST Act, 2017 (Sections 10–13) determines the place of supply for each transaction. If the place of supply is in a different state from the supplier's state, IGST is charged. If both are in the same state, CGST + SGST apply. Multi-state businesses must evaluate place of supply for every transaction.

⚠️ Key Distinction: Having a branch or warehouse in another state does NOT automatically mean you need a separate GSTIN in that state. The obligation arises when (a) you make taxable supplies from that state, (b) you make inter-state supplies, or (c) turnover from that state exceeds the threshold. However, practically all operating branches and warehouses fulfil one of these conditions.

When Multi-State GST Registration is Required

Section 24 of the CGST Act lists categories where registration is mandatory irrespective of turnover. Section 22 requires registration when aggregate turnover exceeds the threshold. Both apply across all states independently.

Mandatory Triggers for Each State Sec 24

Sec 24(i)

Inter-State Taxable Supplies — No Threshold

Any person making an inter-state taxable supply of goods or services must register — regardless of aggregate turnover. A manufacturer in Maharashtra selling to a buyer in Karnataka must register in Maharashtra. If the same entity also has a warehouse in Karnataka from which it makes local supplies, it must separately register in Karnataka as well.

Sec 24(ii)

Casual Taxable Persons (CTP) — Operating in Multiple States

A Casual Taxable Person — one who occasionally makes supplies in a state where they do not have a fixed place of business (e.g., a Delhi trader supplying at a trade fair in Bengaluru) — must register in that state as a CTP before commencing supplies. CTP registration is state-specific, temporary (valid up to 90 days, extendable once), and requires an advance deposit of estimated tax liability.

Sec 22(1)

Threshold-Based Registration in Each State

Even without inter-state supply, if a business has a branch or office in another state and the aggregate turnover (across all states under the same PAN) exceeds ₹40 lakh (goods) / ₹20 lakh (services) / ₹10 lakh (special states), it must register in every state where it has a business establishment and makes taxable supplies. The threshold is computed on aggregate national turnover, not per-state turnover.

Sec 24(x)

E-Commerce Operators — All States of Operation

Every e-commerce operator must register under GST — without any threshold exemption — in every state from which their platform enables supplies. If an e-commerce operator has sellers in multiple states, the operator must register in all states from which it collects TCS (Tax Collected at Source) under Section 52. This is state-specific registration at the operator's place of business in each state.

Sch I Para 2

Distinct Person Supplies — Factories, Warehouses, Branches

Once a business has separate registrations in two or more states, all supplies between such establishments (stock transfers, manpower, shared services cost recovery, management charges, IT services, marketing support) are taxable supplies — even without consideration (i.e., at cost or below cost). This means every inter-branch invoice must carry IGST, and both units must file returns reflecting these transactions.

Sec 24(iv)

Non-Resident Taxable Persons (NRTP)

A Non-Resident Taxable Person — a foreign entity making taxable supplies in India without a fixed establishment — must register in each state where it makes such supplies. Like CTP, NRTP registration is temporary (up to 90 days), requires advance tax deposit, and must be obtained before commencing supply. NRTP registration is state-specific and cannot be used across multiple states under a single registration.

State-wise Registration Obligation Matrix

Business Scenario State A State B State C Trigger
HO in Maharashtra, branch office in Karnataka making local sales Required Required Not required Sec 22(1) — taxable supply in each state
Delhi manufacturer selling inter-state to 15 states Required (Delhi) Not required* Not required* Sec 24(i) — register in state of supply origin; buyer's state not required if no establishment
IT company with registered office in Chennai, delivery centre in Hyderabad, client billing from both Required (Tamil Nadu) Required (Telangana) Not required Sec 22(1) + Sec 25(1) — fixed establishment in each state making taxable supply
Retailer with stores in 8 states (all same PAN) Required Required Required (all 8 states) Sec 25(1) — separate registration in each state of business
Consultant in Mumbai with no office elsewhere, serves clients across India via email/online Required (Maharashtra) Not required Not required For services, place of supply is location of recipient — supplier need not register in recipient's state if no fixed establishment there
Marketplace e-commerce operator with fulfillment centres in 5 states Required Required Required (all 5 states) Sec 24(x) — mandatory registration for e-commerce operators; TCS in each state of operation
Pharmaceutical company: manufacturing in Gujarat, CFA warehouses in 10 states, sales from warehouses Required (Gujarat) Required (all warehouse states) Required (all warehouse states) Sec 25(1) — fixed establishment (warehouse = additional place of business) in each state making supply
📌 Important: *Receiving goods from a seller in another state does NOT require the buyer to register in the seller's state. Registration obligation is based on where the person has a fixed establishment and makes taxable supplies — not where the buyer is located. However, if a buyer also acts as a supplier in that state, registration is needed.

Distinct Persons — Section 25(4) & 25(5)

This is the most critical concept for multi-state businesses. Each GSTIN, whether in the same state or different states under the same PAN, is treated as a distinct legal person for GST purposes — even though it is the same legal entity under company law.

🔴 Critical Rule: Under Section 25(4), each registration of the same entity in different states is treated as a "distinct person". Under Schedule I, Para 2, supplies between distinct persons in the course of or furtherance of business are taxable supplies — even without consideration. This means stock transfers from a factory in one state to a warehouse in another state attract IGST, even if the goods are merely moved internally.
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Section 25(4) — Multiple Registrations, Same PAN

Where a person who has obtained or is required to obtain more than one registration — in the same or different states — each such registration shall be treated as a distinct person. This applies even to additional places of business within the same state if registered separately under Section 25(2).

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Section 25(5) — Establishments in Different States

Where a person has an establishment in India and also an establishment outside India, the establishment in India and the establishment outside India shall be treated as distinct persons. This is relevant for import of services by the Indian entity from its overseas parent/subsidiary under reverse charge.

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Practical Impact — Intra-Entity Transactions

A company with offices in Tamil Nadu and Maharashtra must:
• Issue tax invoices for all transfers of goods or services between the two registrations
• Charge IGST on such invoices
• File GSTR-1, GSTR-3B in each state
• Reconcile ITC between the two units
• Maintain separate books / cost centres per registration

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Valuation of Distinct Person Supplies Rule 28

When goods or services are supplied between distinct persons, the value for GST shall be: (a) Open Market Value, OR (b) if OMV is not available — 90% of the price charged to an unrelated buyer, OR (c) as per cost + 10% margin. If the recipient is eligible for full ITC, the value declared on the invoice is accepted as the transaction value without any challenge.

Illustration: Same PAN, Three States

📘 Example — ABC Pvt. Ltd. (PAN: AABCA1234A):

Registration 1: Maharashtra (GSTIN: 27AABCA1234A1ZX) — Head Office + Manufacturing
Registration 2: Tamil Nadu (GSTIN: 33AABCA1234A1ZP) — Regional Office + Warehouse
Registration 3: Delhi (GSTIN: 07AABCA1234A1ZK) — Sales Office

All three are "distinct persons". ABC Maharashtra sending finished goods to ABC Tamil Nadu warehouse must raise a tax invoice and charge IGST. ABC Tamil Nadu must claim ITC on that IGST and can then sell to its customers in Tamil Nadu charging CGST + SGST (Tamil Nadu). The Delhi unit similarly must receive supplies from Maharashtra under a tax invoice with IGST.

Distinct Persons vs Related Persons — Key Difference

ParameterDistinct Persons (Sec 25(4)/(5))Related Persons (Sec 2(84))
Who qualifiesSame PAN entity with multiple GST registrations (branches, warehouses, head office)Entities with common ownership, control, officers, or family relationships — may have different PANs
Legal basisSection 25(4)/(5) + Schedule I Para 2Section 2(84) + Schedule I Para 2
Taxability of supplyTaxable even without consideration — Schedule I Para 2Taxable even without consideration — Schedule I Para 2
Valuation ruleRule 28 (OMV / 90% / cost + 10%)Rule 28 (same as distinct persons)
GST registrationSame PAN, each GSTIN is a separate taxpayerUsually separate PANs, each is a separate taxpayer
ITC chainIGST charged → Recipient claims ITCIGST charged → Recipient claims ITC

State-wise GSTIN Structure & State Codes

Each GSTIN is a 15-digit alphanumeric number. The first two digits represent the state code of the state in which the registration is granted. This is how a single entity's multiple state registrations can be identified from the GSTIN itself.

✅ Understanding Your 15-Digit GSTIN for Multiple States:
27  AABCA1234A  1  Z  5

27 = State code (Maharashtra) | AABCA1234A = PAN of entity | 1 = Entity number for same PAN in that state (2nd registration in same state = 2, 3rd = 3, up to 9 then A–Z) | Z = Default alphabet | 5 = Check digit

The same PAN in Karnataka would have GSTIN starting with 29AABCA1234A... and in Delhi with 07AABCA1234A...

GST State Codes — All 36 States & UTs

CodeState / UTThreshold (Goods)Threshold (Services)Category
01Jammu & Kashmir₹20L₹10LSpecial
02Himachal Pradesh₹20L₹10LSpecial
03Punjab₹40L₹20LGeneral
04Chandigarh (UT)₹40L₹20LGeneral
05Uttarakhand₹20L₹10LSpecial
06Haryana₹40L₹20LGeneral
07Delhi₹40L₹20LGeneral
08Rajasthan₹40L₹20LGeneral
09Uttar Pradesh₹40L₹20LGeneral
10Bihar₹40L₹20LGeneral
11Sikkim₹20L₹10LSpecial
12Arunachal Pradesh₹20L₹10LSpecial (NE)
13Nagaland₹20L₹10LSpecial (NE)
14Manipur₹20L₹10LSpecial (NE)
15Mizoram₹20L₹10LSpecial (NE)
16Tripura₹20L₹10LSpecial (NE)
17Meghalaya₹20L₹10LSpecial (NE)
18Assam₹40L₹20LGeneral
19West Bengal₹40L₹20LGeneral
20Jharkhand₹40L₹20LGeneral
21Odisha₹40L₹20LGeneral
22Chhattisgarh₹40L₹20LGeneral
23Madhya Pradesh₹40L₹20LGeneral
24Gujarat₹40L₹20LGeneral
26Dadra & Nagar Haveli and Daman & Diu (UT)₹40L₹20LGeneral
27Maharashtra₹40L₹20LGeneral
29Karnataka₹40L₹20LGeneral
30Goa₹40L₹20LGeneral
31Lakshadweep (UT)₹20L₹10LSpecial
32Kerala₹40L₹20LGeneral
33Tamil Nadu₹40L₹20LGeneral
34Puducherry (UT)₹40L₹20LGeneral
35Andaman & Nicobar Islands (UT)₹20L₹10LSpecial
36Telangana₹40L₹20LGeneral
37Andhra Pradesh₹40L₹20LGeneral
38Ladakh (UT)₹20L₹10LSpecial

Documents Required for Each State Registration

While the PAN and entity-level documents remain the same across all state registrations, the proof of business presence (principal/additional place of business) must be separately provided for each state. The authorised signatory for each state may also differ.

📍 Core Principle: GST registration in a new state uses the same Form GST REG-01. The entity-level documents (PAN, constitution proof, Aadhaar of promoters) are already on record from the first registration, but the portal requires them to be re-uploaded. State-specific documents relate to proof of business presence in that state.
Document Common to All States State-Specific Notes
PAN Card Same PAN used Same entity PAN; GSTIN prefix changes with state code
Aadhaar Authentication Common for promoters May differ for state-specific authorised signatory If adding a new authorised signatory for a specific state, their Aadhaar is required
Constitution Proof Same document COI / Partnership deed — same across all states
Principal Place of Business (New State) State-specific required Electricity bill / property tax receipt / rent agreement for the office/warehouse/factory in the new state. Must be in the applicant's name or with NOC if in owner's name.
Rental/Lease Agreement State-specific If renting premises in the new state — rent agreement + NOC from landlord + landlord's address proof
Consent Letter If consent premises If using another person's premises (e.g., relative's property) — consent letter on ₹100 stamp paper + supporting ownership document
Bank Account Can be same account The same bank account can be used across all state GSTINs. Submit cancelled cheque / passbook first page. Must be submitted within 45 days of GSTIN grant.
Authorised Signatory Can be same person May appoint a local signatory per state Board resolution / authorisation letter for signatory of each state registration. For companies: Board resolution on company letterhead.
Photograph Common for directors State-specific signatory photograph if different Passport size photographs required for each authorised signatory
DSC (Digital Signature Certificate) Same DSC For companies and LLPs: same Class 2/3 DSC used across all state applications. New DSC not required for each state.
⚠️ Warehouse / Go-Down as Principal Place of Business: If the business presence in the new state is only a warehouse or go-down (no office), the warehouse address becomes the principal place of business for that state's GSTIN. Ensure the rent agreement/lease agreement and electricity bill are in the company's name or carry an NOC. GSTN officers routinely verify the existence of a physical establishment at the provided address before granting registration.

Registration Process — New State GSTIN

Each new state registration requires a fresh Form GST REG-01 application. The process is identical to the first registration, but since the entity is already known to the system (same PAN), some details auto-populate. Aadhaar authentication and officer verification still apply.

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New Application

File fresh Form GST REG-01 on GST Portal. Select new state. PAN auto-verified.

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Aadhaar Auth

Complete Aadhaar OTP verification for promoters and authorised signatory within 15 days of ARN

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State-Specific Details

Enter new state's principal place of business, HSN/SAC codes, bank details, signatories

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Submit + ARN

Submit with DSC/EVC. New ARN generated for this state-specific application

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Officer Verification

7 working days (Aadhaar auth) or 30 days (non-Aadhaar). Physical verification possible for new state

New State GSTIN

New 15-digit GSTIN with state code of the new state. Certificate in Form GST REG-06.

Timeline for New State Registration Rule 9 & 10

1
Day 0 — File Application in New State Day 0
Log in to GST Portal → New Registration → Select new state → Fill Form GST REG-01 with state-specific details. TRN (Temporary Reference Number) generated first; then Part B for full application. ARN generated on submission.
2
Aadhaar Authentication Within 15 days of ARN
All specified persons must complete Aadhaar OTP authentication within 15 days of ARN generation. The Aadhaar authentication link is sent to the registered mobile/email of each promoter. Rule 8(4A). If the promoter has already authenticated Aadhaar for another state, they may need to repeat it for the new state application.
3
Officer Review — 7 Working Days (Aadhaar Auth) Day 1–7
If Aadhaar authenticated: The proper officer of the new state has 7 working days to approve or issue a Show Cause Notice in Form GST REG-03. Since this is a new state, physical verification of the business premises in the new state is common — particularly for warehouses and go-downs. If no action within 7 days: registration deemed granted. Section 25(10)
!
Physical Verification Notice May be issued before/after approval
For new state registrations — especially warehouse/factory addresses — the GST officer frequently issues a physical verification order (Form GST REG-30) to confirm existence of the business establishment. The officer or a designated inspector visits the premises. Reply in Form GST REG-04 if additional documents are sought. Ensure premises are operational and accessible at the time of verification.
4
Officer Review — 30 Days (Non-Aadhaar) Day 1–30
Without Aadhaar authentication, the officer has 30 days. For new states where a fresh business presence is being established (e.g., a new warehouse), this longer timeline should be anticipated in project planning — register well before commencing operations.
New State GSTIN Granted — Form GST REG-06 Effective date
New state GSTIN issued. Certificate available for download. Effective Date: Date of application (if obligation arose before or on that date) or the date from which the obligation arose — whichever is earlier. For mandatory registrations, register before commencing supply in the new state to avoid back-dated liability.
5
Bank Account + Return Setup Within 45 days of GSTIN
Submit bank account details within 45 days. Set up separate accounting cost centre / sub-ledger for the new state GSTIN. Configure billing and inventory software to use the new GSTIN for transactions originating from the new state. Ensure GSTR-1 and GSTR-3B filing calendars are set up for the new GSTIN.
💡 Practical Tip — Register Before Commencing Supply: Section 25(1) requires registration within 30 days from the date a person becomes liable to register. For a new state, this means within 30 days of opening the warehouse, factory, or branch office that will make taxable supplies. Late registration invites back-dated tax liability from the date of commencement of supply, plus interest at 18% p.a. — not from the date of actual registration.

Input Service Distributor (ISD) & Cross-Charge

Multi-state businesses incur common expenses (rent for HO, software licences, professional fees, advertising) that benefit multiple state registrations. ISD and cross-charge are two mechanisms to distribute such common ITC and costs across states.

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Input Service Distributor (ISD) Sec 2(61) & Sec 20

An ISD is a registered office of a taxpayer that receives invoices for common input services (e.g., software, corporate rent, management consulting, insurance) and distributes the ITC to other registrations (branches/units) in proportion to their turnover. ISD registration is a separate GSTIN — typically for the head office — and requires a separate Form GST REG-01 with "Input Service Distributor" as the registration type.

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Cross-Charge Sec 7(1)(c) r/w Sch I

Cross-charge is the mechanism where the head office or one unit "charges" another unit for services rendered to it — e.g., HO providing HR, IT, finance, legal services to branches. Since distinct persons are separate taxpayers, HO raises a tax invoice to the branch for the cost of these services (plus margin if applicable). The branch claims ITC on the IGST charged. Cross-charge and ISD are two different, sometimes overlapping, mechanisms.

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ISD vs Cross-Charge — When to Use Which

Use ISD: When the HO receives an invoice for a service that purely benefits branches (no activity performed by HO) — e.g., insurance premium for all branches paid through HO.

Use Cross-Charge: When HO itself performs services for branches and recovers cost — e.g., HO's HR team manages recruitment for all branches; HO IT team provides software support to branches. In such cases, HO must raise a tax invoice for the service.

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ISD Distribution Formula Rule 39

ITC to be distributed by ISD is allocated to each recipient unit in the ratio of their turnover in the state during the previous financial year (or, for new units, based on estimated turnover). Separate computation required for IGST and CGST+SGST components. ISD files a special return in Form GSTR-6. Each recipient unit receives ITC in Form GSTR-2B.

ISD vs Cross-Charge — Comparison Table

ParameterISD (Sec 2(61) + Sec 20)Cross-Charge (Sch I Para 2)
NatureMechanism to distribute ITC of common input servicesMechanism to recover cost of services provided by HO to branches
When usedCommon vendor invoice received at HO for services benefiting all branchesHO's own employees/resources used to serve branches
Document raisedISD Invoice / ISD Credit Note / ISD Debit NoteTax Invoice by HO to each branch
GSTIN requiredSeparate ISD registration (in same state as HO or a separate state)No separate GSTIN needed; uses existing HO GSTIN
Return filingGSTR-6 (monthly) by ISDGSTR-1 (HO reports as B2B supply to branch's GSTIN)
ITC in branch's handsReflected in GSTR-2B of branch automaticallyBranch must reconcile with HO's GSTR-1 filing
GST chargedNo tax charged — only ITC distributedIGST at applicable rate charged on the invoice
ValuationNot applicable — ITC distribution, not supplyRule 28 — OMV / 90% / cost + 10%. If recipient eligible for full ITC, invoice value accepted.
CBIC clarificationCircular 199/2023-GST — ISD mandatory for services where ITC needs distributionCircular 199/2023-GST — Cross-charge for services performed by HO to branches
🔴 Important — Circular 199/11/2023-GST (17.07.2023): The CBIC issued comprehensive clarifications distinguishing ISD from cross-charge. Key takeaway:
(1) Where a common input service invoice is received by the HO and the service benefits only the branches (not HO itself), ISD is the appropriate mechanism — not cross-charge.
(2) Where the HO itself provides services to branches (using its own employees, infrastructure, resources), cross-charge is the appropriate mechanism.
(3) Both ISD and cross-charge can co-exist for the same entity depending on the nature of each expense. Businesses must review their expense categories and route them correctly.

ISD Registration — Additional Requirements

ISD Setup

Separate GSTIN for ISD Function

An ISD is registered separately under GST — even if the HO already has a regular GSTIN for the same address. The ISD GSTIN is used exclusively for receiving vendor invoices for common services and distributing ITC to branches. The ISD GSTIN cannot be used for making any taxable supply or claiming ITC for the HO's own use.

GSTR-6

Monthly Return for ISD

ISD files Form GSTR-6 monthly by the 13th of the following month. GSTR-6 shows: (a) details of invoices received, (b) total ITC eligible for distribution, (c) ITC distributed to each recipient GSTIN, and (d) ISD invoices/credit notes/debit notes issued. The distributed ITC appears in the recipients' GSTR-2B automatically.

Rule 39

Eligible & Ineligible ITC — ISD Must Segregate

The ISD must distribute only eligible ITC (ITC that would be available to the recipient unit for its own business). ITC blocked under Section 17(5) (motor vehicles, food & beverages, club memberships, etc.) cannot be distributed. ITC attributable exclusively to one unit must be distributed only to that unit — not spread across all units. Pro-rata allocation applies only to common ITC.

Stock Transfers & Branch Billing Across States

Moving goods from one state registration to another — whether to a warehouse, factory, or branch — is a taxable supply under Schedule I. Proper documentation and IGST charging are mandatory.

📦 Legal Position: Under Section 7(1)(c) read with Schedule I, Para 2, transfer of goods between distinct persons (different state GSTINs of the same entity) in the course of business is a supply — even without consideration. IGST must be charged at the applicable rate. The receiving unit claims IGST as ITC and uses it against its own output tax liability.

Step-by-Step: Factory to Warehouse Transfer (Maharashtra → Karnataka)

1
Determine Applicable GST Rate
Identify the HSN code of the goods being transferred. Apply the GST rate applicable to that HSN. Example: Pharmaceutical goods (HSN 3004) — 12% GST. The rate is the same whether sold to a third party or transferred to a branch.
2
Determine Transfer Value — Rule 28
If the Karnataka unit resells to unrelated customers: 90% of the price charged to customers is the transfer value. If full ITC is available at the Karnataka unit: value declared on the invoice is acceptable — no challenge from department. If Karnataka unit has any exempt supplies or non-ITC supplies: OMV or cost + 10% applies.
3
Raise Tax Invoice (Maharashtra GSTIN to Karnataka GSTIN)
Maharashtra unit raises a B2B tax invoice:
• Supplier GSTIN: 27AABCA1234A1ZX (Maharashtra)
• Recipient GSTIN: 29AABCA1234A1ZP (Karnataka)
• Place of Supply: Karnataka (29)
• Tax type: IGST (inter-state supply)
• Value: Transfer value as per Rule 28
• IGST amount: Value × applicable rate
4
E-Way Bill Generation
For inter-state movement of goods where the consignment value exceeds ₹50,000 (₹1 lakh for within-state in some states), E-Way Bill must be generated on the E-Way Bill portal (ewaybillgst.gov.in) before commencing movement. The E-Way Bill must reference the tax invoice number. Transporter's vehicle number must be updated. E-Way Bill is mandatory even for branch transfers (distinct person supplies).
5
Report in GSTR-1 (Maharashtra) and Claim ITC in Karnataka
Maharashtra unit reports the B2B invoice in GSTR-1 under "B2B" section using Karnataka unit's GSTIN. Karnataka unit sees the ITC in GSTR-2B in the following month. Karnataka unit claims ITC in GSTR-3B Table 4. Maharashtra unit discharges IGST liability in its GSTR-3B Table 3.1.
Reconciliation & Books
Reconcile intercompany accounts monthly. Ensure GSTR-1 of the sending unit matches GSTR-2B of the receiving unit. Any mismatch needs to be addressed before annual reconciliation (GSTR-9/GSTR-9C). Maintain stock register at each state GSTIN to reflect accurate closing stock for GST purposes.
⚠️ CFA (Carrying and Forwarding Agent) Arrangements: Many FMCG and pharmaceutical companies route goods through Carrying and Forwarding Agents (CFAs) in each state. If the CFA receives goods on behalf of the manufacturer and sells in the CFA's name, the CFA may be treated as a principal — not an agent — requiring the CFA to register separately. If the CFA only stores goods and dispatches to buyers in the manufacturer's name, the manufacturer's state GSTIN suffices, but the CFA's premises must be declared as an "additional place of business" in that state's GSTIN.

State-wise Compliance Obligations

Each state GSTIN is an independent taxpayer. All return filing, tax payment, and reconciliation obligations must be met separately for each GSTIN. There is no consolidated national return or payment under the current GST framework.

Compliance Frequency Due Date Applicable GSTIN Notes
GSTR-1 / IFF Monthly (or Quarterly under QRMP) 11th of next month (Monthly) / 13th of month after quarter (QRMP) Each state GSTIN separately All outward B2B, B2C, inter-state, and inter-unit (branch transfer) invoices must be reported. The receiving state's GSTIN sees ITC in GSTR-2B.
GSTR-3B Monthly (or Quarterly under QRMP) 20th of next month (large taxpayers) / 22nd or 24th (others, staggered by state) Each state GSTIN separately Separate tax payment for each state. IGST, CGST, SGST ledgers are state-specific. No netting off between states.
GSTR-2B Reconciliation Monthly Available 14th of next month Each state GSTIN separately Each state GSTIN has its own GSTR-2B. ITC from inter-state supplies (including branch transfers from other states) appears here.
GSTR-6 (ISD) Monthly 13th of next month ISD GSTIN only Only if ISD registration obtained. Shows distribution of ITC to recipient branches across states.
GSTR-9 / GSTR-9C Annual 31st December of next FY Each state GSTIN separately Separate annual return and audit certificate for each GSTIN. GSTR-9C (reconciliation statement) required if turnover of a specific GSTIN exceeds ₹5 crore.
E-Way Bill Per transaction (inter-state goods movement) Before movement of goods Sending state GSTIN Mandatory for all inter-state goods movement above ₹50,000 per consignment. Both the supplier's state GSTIN and the recipient's state GSTIN must be reflected in the E-Way Bill.
LUT / Bond (Export) Annual Before export in each FY Exporting state GSTIN If a specific state GSTIN makes exports (zero-rated supply), that state GSTIN must file a separate LUT (Letter of Undertaking) on the GST portal. A single LUT from the HO does not cover exports from other state GSTINs.
TDS (Sec 51) / TCS (Sec 52) Monthly 10th of next month State GSTIN where deduction/collection arises Government entities deducting TDS must register and file separately in each state. E-commerce operators must register and file TCS returns for each state.
✅ GSTR-3B Due Dates by State — Staggered Calendar (Monthly Filers):

20th of the month: Taxpayers with annual aggregate turnover above ₹5 crore (all states)
22nd of the month: Taxpayers with aggregate turnover up to ₹5 crore — States: Himachal Pradesh, Punjab, Uttarakhand, Haryana, Rajasthan, Uttar Pradesh, Bihar, Sikkim, Arunachal Pradesh, Nagaland, Manipur, Mizoram, Tripura, Meghalaya, Assam, West Bengal, Jharkhand, Odisha, J&K, Ladakh, Chandigarh, Delhi
24th of the month: Taxpayers with aggregate turnover up to ₹5 crore — States: Maharashtra, Karnataka, Goa, Kerala, Tamil Nadu, Telangana, Andhra Pradesh, MP, Chhattisgarh, Gujarat, Dadra & NH, Daman & Diu, Lakshadweep, Puducherry, Andaman & Nicobar

Multi-state businesses with GSTINs in multiple groups must track each state's due date separately.

Special Category States — Different Thresholds & Rules

Eleven states are designated as "Special Category States" under Article 279A(4)(g) of the Constitution. These states have lower GST registration thresholds and may have additional exemptions. A multi-state business must apply the correct threshold for each state.

₹10L
Services Threshold — Special States
Arunachal Pradesh, Manipur, Meghalaya, Mizoram, Nagaland, Sikkim, Tripura, Himachal Pradesh, Uttarakhand, J&K, Puducherry. Service suppliers in these states must register if aggregate turnover exceeds ₹10 lakh.
₹20L
Goods Threshold — Special States
Same 11 special category states — the goods threshold is ₹20 lakh (vs ₹40 lakh in general states). A goods trader in Sikkim with ₹25 lakh turnover must register; the same turnover in Punjab does not trigger registration.
₹40L
Goods Threshold — General States
All states and UTs except the 11 special category states. Enhanced from ₹20 lakh to ₹40 lakh w.e.f. 01.04.2019 vide Notification 10/2019-CT. Services threshold remains at ₹20 lakh for these states.
₹20L
Services Threshold — General States
For service suppliers (or mixed suppliers) in general category states, the threshold is ₹20 lakh. No enhancement announced for services. Inter-state supply overrides this threshold — any inter-state supply mandates registration regardless of turnover amount.
📊 Aggregate Turnover — Computed Nationally, Not Per-State: The threshold is compared against the aggregate turnover of the person under a single PAN across all states and all types of supply (taxable + exempt + zero-rated + inter-state — but excluding GST itself). A business with ₹35 lakh turnover from Punjab (one state GSTIN) and ₹15 lakh from a Sikkim branch has an aggregate turnover of ₹50 lakh — well above every state's threshold — and must register in both Punjab and Sikkim, even though Sikkim's own turnover of ₹15 lakh is below Sikkim's ₹20 lakh goods threshold on a standalone basis.

Amending, Adding, & Surrendering State Registrations

Business expansion and contraction require corresponding updates to multi-state GST registrations. Each state GSTIN can be independently amended or surrendered. Core field amendments require officer approval; non-core amendments are auto-approved.

Adding a New State GSTIN

When expanding to a new state — new warehouse, new branch office, new franchise — file a fresh Form GST REG-01 for the new state. This is a completely new registration, not an amendment of the existing state GSTIN. Register before or within 30 days of commencing taxable supply in the new state. Section 25(1)

📍

Adding More Branches Within the Same State

If a company already registered in Karnataka opens a second warehouse in Karnataka, it does NOT need a second GSTIN for Karnataka. Instead, amend the existing Karnataka GSTIN using Form GST REG-14 to add the new warehouse as an "additional place of business". A single state can have multiple places of business under one GSTIN. Rule 19

Surrendering / Cancelling a State GSTIN

If a business closes operations in a state — warehouse closed, branch shut — apply for voluntary cancellation of that state's GSTIN in Form GST REG-16. All pending returns up to the cancellation date must be filed, all dues paid. A final return in Form GSTR-10 must be filed within 3 months of cancellation. Reverse ITC on closing stock. Section 29(1)

🔀

Change of State (Business Relocation)

If a business relocates from one state to another (e.g., shifting registered office from Mumbai to Bengaluru), the old state GSTIN cannot be transferred. A new GSTIN must be obtained in the new state, and the old state GSTIN must be cancelled. Inter-state transfers of closing stock to the new state GSTIN must be treated as taxable supplies (IGST applicable). The new GSTIN effective date should be coordinated with the cancellation date of the old GSTIN.

Core vs Non-Core Amendments — Multi-State Context Rule 19

Core — 15 Days

Principal Place of Business Address Change in a State

If a company moves its warehouse or branch office to a different address within the same state, this is a core field amendment requiring officer approval within 15 working days. File Form GST REG-14 with the new address proof. The officer in the new state jurisdiction may conduct a physical verification before approving the amendment. Critical: Ensure new address is operational before filing the amendment to pass physical verification if ordered.

Core — 15 Days

Change in State-Level Authorised Signatory

Adding or changing the authorised signatory for a specific state GSTIN involves a core field amendment (addition/deletion of persons) in that state's registration. File REG-14 with the board resolution / authorisation letter for the new signatory and their Aadhaar details. Each state GSTIN can have its own authorised signatory independent of other states.

Non-Core — Auto

Bank Account, HSN/SAC Codes, Mobile/Email Updates

Updating bank account details, adding new HSN/SAC codes, changing mobile number or email address of the authorised signatory for a specific state GSTIN are non-core field amendments — auto-approved without officer intervention. File Form GST REG-14; changes effective on submission. These amendments can be made independently for each state GSTIN without affecting other state registrations.

Penalties for Non-Registration & Non-Compliance — Multi-State

Operating without a required state GSTIN — whether through ignorance or deliberate evasion — attracts severe penalties, back-dated tax demands, and even prosecution. Each unregistered state is treated as a separate violation.

₹10,000
Minimum Penalty Per State — Section 122(1)(xi)
Penalty for collecting tax but failing to deposit it, or for making taxable supply without registering. Minimum ₹10,000 or the tax evaded, whichever is higher — applied per state GSTIN that was not obtained. Applies even if the failure was not deliberate.
100% of Tax
Tax Evasion Penalty — Section 74
Where non-registration was with intent to evade tax — penalty is 100% of the tax amount involved. Tax is computed from the date the obligation to register arose, not from the date of actual registration. Each state's supply is assessed independently.
18% p.a.
Interest on Tax from Date of Obligation
Tax liability arises from the date the person became liable to register — not from the actual registration date. Interest at 18% per annum under Section 50 accrues from that date. For a business that should have registered in a state 2 years ago, the interest burden alone can be substantial.
Prosecution
Wilful Non-Registration — Section 132
Wilful failure to obtain registration where required, resulting in tax evasion of ₹1 crore or more, can result in imprisonment of up to 1 year (₹1–2 crore), up to 3 years (₹2–5 crore), or up to 5 years (above ₹5 crore). Each unregistered state may contribute to the cumulative evasion amount.
₹25,000
E-Way Bill Violations — Rule 138F
Moving goods between states without a valid E-Way Bill — ₹10,000 or tax evaded, whichever is higher. Goods and the conveyance can be seized and detained. A ₹25,000 penalty applies to the transporter. Particularly common in stock transfer/branch transfer situations where the seller forgets to generate E-Way Bills for inter-state movement to own warehouses.
₹5,000 / day
Failure to File Returns Per GSTIN
Late fee for GSTR-3B: ₹50/day (₹20/day for Nil returns), capped at ₹10,000 per return. For a business with 10 state GSTINs filing 2 months late, the late fee exposure is ₹10,000 × 10 GSTINs × 2 months = ₹2,00,000. Each state GSTIN has its own late fee clock running independently.

Key CBIC Notifications — Multi-State Registration

The following Central Tax notifications directly affect multi-state registration obligations, inter-state supply rules, ISD mechanism, and compliance requirements for businesses operating across states.

Threshold & Exemption Notifications

10/2019-CT

Enhancement of Goods Threshold to ₹40 Lakh — Most States

Enhanced the registration threshold for goods suppliers from ₹20 lakh to ₹40 lakh in all states that opted for the higher threshold. Directly impacts whether a warehouse-only presence in a general category state crosses the threshold. States that opted to retain ₹20 lakh: Himachal Pradesh, Uttarakhand, J&K, Puducherry, Arunachal Pradesh, Manipur, Meghalaya, Mizoram, Nagaland, Sikkim, Tripura (special category states retain ₹20L for goods).

Date: 07.03.2019 | Effective: 01.04.2019

View Official Notification ↗
02/2019-CT

₹10 Lakh Services Threshold — Special Category States

Notified ₹10 lakh as the registration threshold for service suppliers in 10 special category states. Critical for businesses providing services from branches in NE states — even a small services revenue stream from an office in Manipur or Mizoram above ₹10 lakh requires separate registration in that state. Effective from 01.04.2019.

Date: 07.03.2019 | Effective: 01.04.2019

10/2017-IT

Exemption from Mandatory Inter-State Registration — Notified Handicraft Goods

Persons making inter-state supplies of notified goods (handloom products, handicrafts, Khadi, coir, zari items, jute items) are exempt from the mandatory registration requirement under Section 24(i) — provided their aggregate turnover is below the applicable threshold. Relevant for artisans and weavers in special category states who sell to buyers in other states. Amended by Notification 03/2018-IT.

Date: 13.10.2017

ISD & Cross-Charge Clarifications

Circular 199/2023

Comprehensive Clarification — ISD vs Cross-Charge for Multi-State Businesses

The most important circular for multi-state businesses. Clarifies: (1) ISD is appropriate where HO receives vendor invoice for services benefiting only branches. (2) Cross-charge is appropriate where HO itself performs services for branches. (3) Both mechanisms can co-exist. (4) If recipient branch is eligible for full ITC, the value of cross-charge is not challengeable. (5) Salaried employees of HO working for branches — cost must be cross-charged; even if free of cost, Schedule I Para 2 treats it as supply. (6) ISD is not mandatory where full ITC is available at recipient.

Date: 17.07.2023

View on CBIC Portal ↗
Budget 2024 Amendment

ISD Made Mandatory w.e.f. 01.04.2025 — Finance Act 2024

The Finance Act 2024 amended Section 20 to make ISD registration mandatory for all taxpayers receiving common input service invoices (like rent, insurance, professional services, software licences) that are used by multiple state GSTINs. W.e.f. 01.04.2025, businesses cannot continue routing all common service ITC through cross-charge alone — they must register as ISD and distribute ITC via GSTR-6. Multi-state businesses need to review their current cross-charge structure and set up ISD by April 2025.

Finance Act 2024 | Effective: 01.04.2025

Circular 210/2024

Clarification on Place of Supply for Services Between Distinct Persons

Clarified the place of supply rules for B2B services between distinct persons (different state GSTINs of the same entity). Place of supply is the location of the recipient's GSTIN. This determines whether IGST or CGST+SGST applies on the cross-charge invoice. For example, HO in Maharashtra providing IT support services to Tamil Nadu branch: place of supply is Tamil Nadu — IGST applies on the HO's invoice to the TN branch.

Date: 2024

Process & E-Way Bill Notifications

27/2017-CT(R)

E-Way Bill Threshold — ₹50,000 for Inter-State Movement

E-Way Bill is mandatory for movement of goods where the consignment value exceeds ₹50,000 for inter-state supplies. Applies to all stock transfers between distinct persons (branch-to-branch, factory-to-warehouse) across states. No exemption for intra-company transfers — E-Way Bill is required even for own stock movement across state borders.

Date: 27.08.2017 | Amended multiple times

16/2022-CT

Deemed Registration in 7 Working Days — Aadhaar Authenticated Applications

Amended Rule 9 to provide that if no action is taken by the proper officer within 7 working days on an Aadhaar-authenticated application, registration is deemed granted. This 7-day deemed approval applies to each new state registration as well — beneficial for businesses rapidly expanding to new states and needing quick GSTIN activation to commence operations and billing.

Date: 13.09.2022

94/2020-CT

Bank Account Details — 45-Day Rule for Each New State GSTIN

The 45-day bank account submission rule (Rule 10A) applies independently to each state GSTIN at the time of its grant. For multi-state businesses, each new state registration starts its own 45-day clock. Failure to submit bank details for a specific state GSTIN — even if other state GSTINs have bank details — results in a Form GST REG-31 notice for that specific GSTIN and potential suspension of returns filing for that state.

Date: 22.12.2020

Data & Analytics — Multi-State GST Landscape

Visual overview of GST registrations across India, state-wise active taxpayer distribution, and compliance filing patterns relevant to multi-state businesses.

State-wise Active GSTIN Distribution (Top 10 States)

As a % of total 1.47 crore+ active GSTINs nationally — FY 2024-25

Multi-State Registration Types

Classification of registrations by number of states per PAN

IGST vs CGST+SGST Revenue Split

Monthly collection pattern — reflects inter-state vs intra-state supply volume (FY 2024-25)

Special Category State vs General State — Active GSTINs

Registration density per lakh population (illustrative for compliance planning)

Multi-State GST Compliance Checklist

Use this checklist when expanding to a new state, reviewing existing multi-state compliance, or during annual GST audit. Each point applies per state GSTIN.

  • Identify all states where the business has a fixed establishment (office, warehouse, factory, depot, CFA) making taxable supplies — each requires a separate GSTIN.
  • Verify that the registration in each state was obtained within 30 days of commencing taxable supply or reaching the threshold in that state — avoid back-dated liability.
  • Ensure the principal place of business address document (rent agreement / electricity bill / property tax) for each state is current, in the company's name, and matches the GST registration records.
  • Confirm that each state GSTIN has an active authorised signatory with valid Aadhaar — if the DSC of the signatory has expired, renew it to maintain filing capability.
  • Verify that bank account details have been submitted for every state GSTIN within 45 days of grant (Rule 10A) — non-submission leads to GST REG-31 notice and suspension.
  • Set up GSTR-1 and GSTR-3B filing calendar for every state GSTIN — different due dates apply based on the state and turnover category.
  • Ensure all inter-state stock transfers (factory to warehouse, HO to branch) are supported by IGST tax invoices, E-Way Bills, and reflected in GSTR-1 of the sending state and ITC claimed in GSTR-3B of the receiving state.
  • Review whether the business needs an ISD registration — especially after the Finance Act 2024 making ISD mandatory w.e.f. 01.04.2025 for common input services distributed across multiple state GSTINs.
  • Ensure cross-charge invoices are raised by the head office to each branch for employee costs, management charges, IT support, and other HO services — Schedule I Para 2 requires this even without consideration.
  • Validate that the valuation of inter-unit (distinct person) supplies follows Rule 28 — OMV, or 90% of selling price to unrelated buyers, or cost + 10% markup where applicable.
  • Reconcile GSTR-2B of each receiving state GSTIN against GSTR-1 of the supplying state GSTIN monthly — any mismatch must be resolved before annual return filing.
  • File separate GSTR-9 (and GSTR-9C if applicable) for each state GSTIN by 31st December — GSTR-9C required where the specific state GSTIN's turnover exceeds ₹5 crore.
  • If any state has LUT/Bond for exports, ensure it is renewed annually for that state's GSTIN — a single LUT filed at one state GSTIN does not cover exports from other state GSTINs.
  • For warehouses in special category states (NE states, Himachal Pradesh, Uttarakhand, J&K), apply the lower threshold (₹20 lakh goods / ₹10 lakh services) — registration obligations arise earlier than in general states.
  • If any state GSTIN is no longer active (warehouse closed, branch wound up), file voluntary cancellation in Form GST REG-16, file GSTR-10 (final return) within 3 months, and reverse ITC on closing stock.
  • Maintain state-wise profitability statements aligned with GSTIN-wise turnovers — GSTR-9 annual return must match the financial accounts for that state's GSTIN; a consolidated P&L is insufficient.

Frequently Asked Questions

The most common questions from businesses with multi-state operations, answered with legal references.

No. Under Section 25(1) of the CGST Act, every person liable to be registered must apply in every State or Union Territory from which they make taxable supplies. There is no concept of a "national GSTIN". Each state is a separate jurisdiction. A business making supplies from Tamil Nadu and Maharashtra must have separate GSTINs for both states — 33XXXXXX... and 27XXXXXX... respectively. Using only one state's GSTIN for pan-India supplies constitutes non-registration in the other states and attracts penalties.

Yes, almost certainly. If your warehouses receive goods (via inter-state transfers from Delhi) and then dispatch goods to local buyers in each state, those warehouses are making taxable supplies in those states — triggering Section 22(1) registration requirements in each state. Even if the billing happens from Delhi, the actual supply (delivery of goods) happens from the warehouse state. Additionally, the stock transfer from Delhi HQ to each warehouse is itself an inter-state supply (Section 24(i)) requiring Delhi registration — which you already have. Register in all 8 warehouse states before or within 30 days of commencing local deliveries from each warehouse.

Yes. Under Schedule I, Para 2 of the CGST Act, supplies between distinct persons (different state GSTINs of the same entity) in the course of business are taxable supplies — even without consideration (even at zero value or cost price). IGST must be charged at the applicable rate on the value determined under Rule 28. The receiving warehouse claims ITC on the IGST charged. This was a major change from the pre-GST regime where inter-branch stock transfers were often treated as non-taxable. Failing to charge IGST on inter-state stock transfers is a common audit trigger and results in demands plus penalties.

Both mechanisms handle the distribution of costs/ITC from the head office to branches, but they work differently. ISD (Input Service Distributor) is used when the head office receives a vendor invoice for a service that benefits the branches — the HO does not "perform" the service itself. The HO distributes only the ITC (tax credit) to the branches in proportion to their turnover via Form GSTR-6. No GST is charged by HO to branches. Cross-charge is used when the HO itself performs services for branches (using its own employees, infrastructure) and recovers the cost — HO raises a tax invoice to the branch charging IGST. CBIC Circular 199/2023 clarified this distinction comprehensively. From April 2025 (Finance Act 2024), ISD registration is mandatory for eligible entities. Use ISD for external vendor costs; use cross-charge for intra-company service recovery.

If the ₹8 lakh from Meghalaya is for services and the aggregate national turnover is ₹30 lakh, then: Meghalaya is a special category state with a ₹10 lakh threshold for services. The Meghalaya-specific turnover is ₹8 lakh — below the ₹10 lakh special state threshold. However, aggregate national turnover of ₹30 lakh exceeds ₹20 lakh (general services threshold). The question is whether the threshold comparison is done on aggregate national turnover or state-specific turnover. Under Section 22(1), registration is required where aggregate turnover (all-India, all-PAN) exceeds the threshold applicable in the state. Since ₹30 lakh exceeds ₹10 lakh (Meghalaya's threshold), registration in Meghalaya is required. Importantly, if no fixed establishment exists in Meghalaya and you're only receiving orders from there without a local presence, registration in Meghalaya may not be needed. Consult a GST advisor for your specific structure.

Yes. Under Section 25(2) of the CGST Act, a person having multiple business verticals (distinct business lines) in the same state may obtain a separate registration for each business vertical. This is optional — the default is one GSTIN per state. The "separate business vertical" is defined in Section 2(18) as a distinguishable component of an enterprise that is engaged in providing individual goods or services. Examples: A conglomerate having an IT services division and a manufacturing division in Tamil Nadu can have two separate GSTINs for Tamil Nadu (33XXXXX...1... and 33XXXXX...2...). Each vertical then maintains separate compliance, returns, and ITC. However, all these are treated as "distinct persons" under Section 25(4), so transfers between them within the same state are taxable supplies attracting CGST + SGST.

When closing operations in a state, follow these steps: (1) File all pending GST returns (GSTR-1, GSTR-3B) for the GSTIN up to the date of closure. (2) Reverse ITC on unsold closing stock, capital goods, and inputs on hand as on the cancellation date — reverse under Section 18(4) / Rule 44. Pay the reversed ITC or the tax on the goods (at fair market value), whichever is higher. (3) Apply for voluntary cancellation in Form GST REG-16. (4) After cancellation order is issued, file GSTR-10 (Final Return) within 3 months of the cancellation order / date of cancellation. (5) Transfer remaining ITC (if any) to another state GSTIN is not possible — ITC is GSTIN-specific and lapses on cancellation. (6) If physical assets are transferred to another state GSTIN of the same entity, charge IGST on the fair market value at the applicable rate.

Yes. E-Way Bill is mandatory for all inter-state movement of goods where the consignment value exceeds ₹50,000 — regardless of whether it is a sale to an unrelated customer or an internal branch transfer to your own warehouse. Since factory and warehouse in different states are "distinct persons", the movement is an inter-state supply (IGST applies), and E-Way Bill is mandatorily required. The E-Way Bill must be generated on the E-Way Bill portal before the goods commence movement. The vehicle number must be updated. Penalty for movement without E-Way Bill: ₹10,000 or the tax amount, whichever is higher, plus the goods can be seized and detained. There is no exemption for intra-company inter-state transfers.